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Venkata Satagopam

Venkata Satagopam

Research scientist

Fakultät oder Zentrum Luxembourg Centre for Systems Biomedicine
Forschungseinheit LCSB
Postadresse Université du Luxembourg
6, avenue du Swing
L-4367 Belvaux
Büroadresse BioTech II Ketterthill, 4.13
E-Mail
Telefon (+352) 46 66 44 6421
Fax (+352) 46 66 44 36421

Scientific staff in the Bioinformatics Core group (Schneider Lab)

Last updated on: Mittwoch, den 09. Juli 2014

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2019

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See detailData and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium
Gu, Wei; Yildirimman, Reha; Van der Stuyft, Emmanuel; Verbeeck, Denny; Herzinger, Sascha; Satagopam, Venkata; Barbosa-Silva, Adriano; Schneider, Reinhard; Lange, Bodo; Lehrach, Hans; Guo, Yike; Henderson, David; Rowe, Anthony; on behalf of the IMI OncoTrack and the IMI eTRIKS consortia

in BMC Bioinformatics (2019), 20(1), 164

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2018

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See detailPresenting and Sharing Clinical Data using the eTRIKS Standards Master Tree for tranSMART
Barbosa-Silva, Adriano; Bratfalean, Dorina; Gu, Wei; Satagopam, Venkata; Houston, Paul; Becnel, Lauren B.; Eifes, Serge; Richard, Fabien; Tielmann, Andreas; Herzinger, Sascha; Rege, Kavita; Balling, Rudi; Peeters, Paul; Schneider, Reinhard

in Bioinformatics (2018)

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See detailFractalis: A scalable open-source service for platform-independent interactive visual analysis of biomedical data
Herzinger, Sascha; Groues, Valentin; Gu, Wei; Satagopam, Venkata; Banda, Peter; Trefois, Christophe; Schneider, Reinhard

in GigaScience (2018)

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See detailThe Luxembourg Parkinson’s Study: A Comprehensive Approach for Stratification and Early Diagnosis
Hipp Epouse D'amico, Géraldine; Vaillant, Michel; Diederich, Nico J.; Roomp, Kirsten; Satagopam, Venkata; Banda, Peter; Sandt, Estelle; Mommaerts, Kathleen; Schmitz, Sabine; Longhino, Laura; Schweicher, Alexandra; Hanff, Anne-Marie; Nicolai, Béatrice; Kolber, Pierre Luc; Reiter, Dorothea; Pavelka, Lukas; Binck, Sylvia; Pauly, Claire; Geffers, Lars; Betsou, Fay; Gantenbein, Manon; Klucken, Jochen; Gasser, Thomas; Hu, Michele; Balling, Rudi; Krüger, Rejko

in Frontiers in Aging Neuroscience (2018), 10

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2017

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See detailConfronting the catalytic dark matter encoded by sequenced genomes
Ellens, Kenneth W.; Christian, Nils; Satagopam, Venkata; May, Patrick; Linster, Carole

in Nucleic Acids Research (2017), 45(20), 11495-11514

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See detailSmartR: An open-source platform for interactive visual analytics for translational research data.
Herzinger, Sascha; Gu, Wei; Satagopam, Venkata; Eifes, Serge; Rege, Kavita; Barbosa Da Silva, Adriano; Schneider, Reinhard

in Bioinformatics (Oxford, England) (2017)

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2016

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See detailMINERVA—a platform for visualization and curation of molecular interaction networks
Gawron, Piotr; Ostaszewski, Marek; Satagopam, Venkata; Gebel, Stephan; Mazein, Alexander; Kuzma, Michael; Zorzan, Simone; McGee, Fintan; Otjacques, Benoit; Balling, Rudi; Schneider, Reinhard

in NPJ Systems Biology and Applications (2016)

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See detailIntegration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.
Satagopam, Venkata; Gu, Wei; Eifes, Serge; Gawron, Piotr; Ostaszewski, Marek; Gebel, Stephan; Barbosa-Silva, Adriano; Balling, Rudi; Schneider, Reinhard

in Big data (2016), 4(2), 97-108

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2015

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See detailConstitutive activation of oncogenic PDGFRalpha-mutant proteins occurring in GIST patients induces receptor mislocalisation and alters PDGFRalpha signalling characteristics.
Bahlawane, Christelle; Eulenfeld, Rene; Wiesinger, Monique; Wang, Jiali; Muller, Arnaud; Girod, Andreas; Nazarov, Petr V.; Felsch, Kathrin; Vallar, Laurent; Sauter, Thomas; Satagopam, Venkata; Haan, Serge

in Cell Communication and Signaling (2015), 13

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See detailThe oncogenic FIP1L1-PDGFRalpha fusion protein displays skewed signaling properties compared to its wild-type PDGFRalpha counterpart.
Haan, Serge; Bahlawane, Christelle; Wang, Jiali; Nazarov, Petr V.; Muller, Arnaud; Eulenfeld, Rene; Haan, Claude; Rolvering, Catherine; Vallar, Laurent; Satagopam, Venkata; Sauter, Thomas; Wiesinger, Monique

in JAK-STAT (2015), 4(1), 1062596

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See detailsiRNA screen identifies QPCT as a druggable target for Huntington's disease.
Jimenez-Sanchez, Maria; Lam, Wun; Hannus, Michael; Sonnichsen, Birte; Imarisio, Sara; Fleming, Angeleen; Tarditi, Alessia; Menzies, Fiona; Ed Dami, Teresa; Xu, Catherine; Gonzalez-Couto, Eduardo; Lazzeroni, Giulia; Heitz, Freddy; Diamanti, Daniela; Massai, Luisa; Satagopam, Venkata; Marconi, Guido; Caramelli, Chiara; Nencini, Arianna; Andreini, Matteo; Sardone, Gian Luca; Caradonna, Nicola P.; Porcari, Valentina; Scali, Carla; Schneider, Reinhard; Pollio, Giuseppe; O'Kane, Cahir J.; Caricasole, Andrea; Rubinsztein, David C.

in Nature chemical biology (2015), 11(5), 347354

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See detailA draft network of ligand–receptor-mediated multicellular signalling in human
Ramilowski, Jordan; Goldberg, Tatyana; Harshbarger, Jayson; Kloppman, Edda; Lizio, Marina; Satagopam, Venkata; Itoh, Masayoshi; Kawaji, Hideya; Carninci; Rost, Burkhard; Forrest, Alistair

in Nature Communications (2015), 6

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See detailComparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
Roume, Hugo; Buschart, Anna; Muller, Emilie; May, Patrick; Satagopam, Venkata; Laczny, Cedric Christian; Narayanasamy, Shaman; Lebrun, Laura; Hoopmann, Michael; Schupp, James; Gillece, John; Hicks, Nathan; Engelthaler, David; Sauter, Thomas; Keim, Paul; Moritz, Robert; Wilmes, Paul

in Biofilms and Microbiomes (2015), 1(15007),

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2014

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See detailThe HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data
Davey, Norman E.; Satagopam, Venkata; Santiago-Mozos, Salvador; Villacorta-Martin, Carlos; Bharat, Tanya A.M.; Schneider, Reinhard; Briggs, John A.G.

in PLoS Computational Biology (2014)

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See detailIntegrating Pathways of Parkinson's Disease in a Molecular Interaction Map
Fujita, Kazuhiro A.; Ostaszewski, Marek; Matsuoka, Yukiko; Ghosh, Samik; Glaab, Enrico; Trefois, Christophe; Crespo, Isaac; Perumal, Thanneer Malai; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kodama, Akihiko; Satagopam, Venkata; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

in Molecular Neurobiology (2014)

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See detailReproducible Research Results R3
Trefois, Christophe; Jarosz, Yohan; Gu, Wei; Satagopam, Venkata; Coronado, Sergio; Schneider, Reinhard

Poster (2014, December)

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2013

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See detailGenome-wide identification and functional analyses of microRNA signatures associated with cancer pain.
Bali, Kiran Kumar; Selvaraj, Deepitha; Satagopam, Venkata; Lu, Jianning; Schneider, Reinhard; Kuner, Rohini

in EMBO Molecular Medicine (2013), 5(11), 1740-58

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See detailTranscriptional mechanisms underlying sensitization of peripheral sensory neurons by Granulocyte-/Granulocyte-macrophage colony stimulating factors.
Bali, Kiran Kumar; Venkataramani, Varun; Satagopam, Venkata; Gupta, Pooja; Schneider, Reinhard; Kuner, Rohini

in Molecular pain (2013), 9(1), 48

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See detailSignaling in Insulin-Secreting MIN6 Pseudoislets and Monolayer Cells.
Chowdhury, Azazul; Satagopam, Venkata; Manukyan, Levon; Artemenko, Konstantin A.; Fung, Yi Man Eva; Schneider, Reinhard; Bergquist, Jonas; Bergsten, Peter

in Journal of proteome research (2013)

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See detailThe Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.
de Ridder, Jeroen; Bromberg, Yana; Michaut, Magali; Satagopam, Venkata; Corpas, Manuel; Macintyre, Geoff; Alexandrov, Theodore

in PLoS computational biology (2013), 9(11), 1003350

See detailA model microbial community for Eco-Systems Biology
Muller, Emilie; Roume, Hugo; Buschart, Anna; Pinel, Nicolas; Laczny, Cedric Christian; Satagopam, Venkata; May, Patrick; Lebrun, Laura; Wilmes, Paul

Poster (2013)

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See detailThe Parkinson's Disease Map: A Framework for Integration, Curation and Exploration of Disease-related Pathways
Ostaszewski, Marek; Fujita, Kazuhiro; Matsuoka, Yukiko; Ghosh, Samik; Glaab, Enrico; Trefois, Christophe; Crespo, Isaac; Perumal, Thanneer Malai; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kolodkin, Alexey; Kodama, Akihiko; Satagopam, Venkata; Biryukov, Maria; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

Poster (2013, March 09)

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See detailOnTheFly 2.0: a tool for automatic annotation of files and biological information extraction.
Pafilis, Evangelos; Pavlopoulos, Georgios; Satagopam, Venkata; Papanikolaou, Nikolas; Horn, Heiko; Arvanitidis, Christos; Jensen, Lars Juhl; Schneider, Reinhard; Iliopoulos, Ioannis

Poster (2013)

See detailIntegrated omics highlights keystone genes in community-wide metabolic networks
Roume, Hugo; Satagopam, Venkata; Muller, Emilie; May, Patrick; Hussong, René; Wilmes, Paul

Poster (2013)

See detailIntegrated omics highlights keystone genes in community-wide metabolic networks
Roume, Hugo; Satagopam, Venkata; Muller, Emilie; May, Patrick; Hussong, René; Wilmes, Paul

Poster (2013)

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See detailNuclear calcium signaling in spinal neurons drives a genomic program required for persistent inflammatory pain
Simonetti, Manuela; Hagenston, Anna; Vardeh, Daniel; Freitag, Eckehard; Mauceri, Daniela; Lu, Jianning; Satagopam, Venkata; Schneider, Reinhard; Costigan, Michael; Bading, Hilmar; Kuner, Rohini

in Neuron (2013), 77(1), 43-57

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2012

See detailConstructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology
Trefois, Christophe; Fujita, A. K.; Ostaszewski, Marek; Matsuoka, Yukiko; Ghosh, Samic; Glaab, Enrico; Crespo, Isaac; Perumal, T. M.; Jurkowski, Wiktor; Antony, Paul; Diederich, Nico; Buttini, Manuel; Kodama, Akihiko; Satagopam, Venkata; Eifes, Serge; del Sol Mesa, Antonio; Schneider, Reinhard; Kitano, Hiroaki; Balling, Rudi

Poster (2012, August)

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2010

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See detailDefective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition
Marji, Jackleen; O'Donoghue, Sean I.; McClintock, Dayle; Satagopam, Venkata; Schneider, Reinhard; Ratner, Desiree; Worman, Howard J.; Gordon, Leslie B.; Djabali, Karima

in PLoS ONE (2010), 5(6),

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See detailPhenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
Neumann, Beate; Walter, Thomas; Heriche, Jean-Karim; Bulkescher, Jutta; Erfle, Holger; Conrad, Christian; Rogers, Phill; Poser, Ina; Held, Michael; Liebel, Urban; Cetin, Cihan; Sieckmann, Frank; Pau, Gregoire; Kabbe, Rolf; Wuensche, Annelie; Satagopam, Venkata; Schmitz, Michael H. A.; Chapuis, Catherine; Gerlich, Daniel W.; Schneider, Reinhard; Eils, Roland; Huber, Wolfgang; Peters, Jan-Michael; Hyman, Anthony A.; Durbin, Richard; Pepperkok, Rainer; Ellenberg, Jan

in Nature (2010), 464(7289), 721-727

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See detailReflect: A practical approach to web semantics
O'Donoghue, Sean I.; Horn, Heiko; Pafilis, Evangelos; Haag, Sven; Kuhn, Michael; Satagopam, Venkata; Schneider, Reinhard; Jensen, Lars J.

in Journal of Web Semantics (2010), 8(2-3), 182-189

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See detailGPCRs, G-proteins, Effectors and their interactions: Human-gpDB, a database employing advanced visualization tools and data integration techniques
Satagopam, Venkata; Theodoropoulou, Margarita C.; Christos, Stampolakis K.; Pavlopoulos, Georgios A.; Papandreou, Nikolaos C.; Bagos, Pantelis G.; Schneider, Reinhard; Hamodrakas, Stavros J.

in Database: the Journal of Biological Databases and Curation (2010)

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See detailGPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques.
Satagopam, Venkata; Theodoropoulou, Margarita C.; Stampolakis, Christos K.; Pavlopoulos, Georgios A.; Papandreou, Nikolaos C.; Bagos, Pantelis G.; Schneider, Reinhard; Hamodrakas, Stavros J.

in Database: the Journal of Biological Databases and Curation (2010), 2010

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See detailMartini: using literature keywords to compare gene sets.
Soldatos, Theodoros G.; O'Donoghue, Sean I.; Satagopam, Venkata; Jensen, Lars J.; Brown, Nigel P.; Barbosa Da Silva, Adriano; Schneider, Reinhard

in Nucleic acids research (2010), 38(1), 26-38

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2008

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See detailClustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence.
Barbosa Da Silva, Adriano; Satagopam, Venkata; Schneider, Reinhard; Ortega, J. Miguel

in BMC bioinformatics (2008), 9

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See detailArena3D: visualization of biological networks in 3D
Pavlopoulos, Georgios A.; O'Donoghue, Sean I.; Satagopam, Venkata; Soldatos, Theodoros G.; Pafilis, Evangelos; Schneider, Reinhard

in BMC Systems Biology (2008), 2

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